Subgroup ID | CpnDB ID | Cpn60 UT Genbank Accession ID | 16S Genbank Accession ID | Strain Name | Description | Sequence Length | Virtual Gel |
---|---|---|---|---|---|---|---|
I-I(E/AI)AI | b27454 | MH279496 | MH279523 (E); MH279522 (AI) | BbSP | Candidatus Phytoplasma asteris Blueberry stunt phytoplasma (BbSP) | 552 bps | |
I-IA | b27096 | KJ939998 | MH279536 | O2L | Candidatus Phytoplasma asteris Allium cepa phytoplasma (O2L) | 552 bps | |
I-IB | b27105 | KJ940013 | MH279534 | SF1 | Candidatus Phytoplasma asteris Linum usitatissimum phytoplasma (SF1) | 552 bps | |
I-IC | b27144 | KJ939994 | MH279535 | AY-Col | Candidatus Phytoplasma asteris Aster yellows phytoplasma (AY-Col) | 552 bps | |
I-IF | b27145 | KJ939995 | MH279545 | CVB | Candidatus Phytoplasma asteris Aster yellows phytoplasma (CVB) | 552 bps | |
I-IIA | b27104 | AB599694 | DQ112021 | GD | Candidatus Phytoplasma asteris Grey dogwood stunt phytoplasma (GD) | 552 bps | |
I-IIB | b27133 | AB599689 | HM590616 | AY-J | Candidatus Phytoplasma asteris Aster yellows phytoplasma (AY-J) | 552 bps | |
I-IIIB | b27135 | KT444673 | KT444671 | MBS-Ver | Candidatus Phytoplasma asteris Maize bushy stunt phytoplasma (MBS-Ver) | 552 bps | |
I-IP | b27151 | AB599710 | HM590626 | PopD | Candidatus Phytoplasma asteris Populus decline phytoplasma (PopD) | 552 bps | |
I-IVB | b27138 | KT444672 | KT444670 | MBS-Pueb | Candidatus Phytoplasma asteris Maize bushy stunt phytoplasma (MBS-Pueb) | 552 bps | |
I-VB | b27139 | AB242234 | Not Available | IPY | Candidatus Phytoplasma asteris Iceland poppy yellows phytoplasma (IPY) | 552 bps | |
II-IA | b27152 | NZ_AMWZ00000000 | NZ_AMWZ00000000 | PnWB | Candidatus Phytoplasma sp. Peanut witches-broom phytoplasma NTU2011 (PnWB) | 555 bps | |
II-IC | b31187 | MH279495 | MH266698 | R018 | Candidatus Phytoplasma aurantifolia (R018) | 555 bps | |
IV-IA | b34437 | KY779619 | HQ613874 | Cocos nucifera phytoplasma | Candidatus Phytoplasma palmae (Cocos nucifera phytoplasma) | 552 bps | |
IV-IC | b32834 | MH922781 | MH922778 | TagTall | Candidatus Phytoplasma cocostanzaniae (TagTall) | 552 bps | |
IV-IE | b32836 | MH922783 | MH922780 | Palm-A-DR | Candidatus Phytoplasma palmae (Palm-A-DR) | 552 bps | |
IX-IA | b27158 | KJ939989 | Not Available | Cr | Candidatus Phytoplasma phoenicium Brazilian Huanglongbing phytoplasma (Cr) | 552 bps | |
IX-IB | b27157 | KND62606 | KM275491 | SA213 | Candidatus Phytoplasma phoenicium Almond witches-broom (SA213) | 552 bps | |
IX-IJ | b31188 | KY986918 | KY986922 | ChicBS | Candidatus Phytoplasma phoenicium (ChicBS) | 552 bps | |
V-IC | b27155 | KJ939990 | MH279544 | RS | Candidatus Phytoplasma sp. rubi Rubus stunt phytoplasma (RS) | 552 bps | |
VII-IA | b27156 | KJ939978 | MH279540 | AshY | Candidatus Phytoplasma fraxini Ash yellows phytoplasma (AshY) | 552 bps | |
X-IA | b27159 | KJ939977 | MH279542 | AP | Candidatus Phytoplasma mali Apple proliferation phytoplasma (AP) | 552 bps | |
X-IC | b27165 | KJ940010 | MH279541 | PYLR | Candidatus Phytoplasma pyri Peach yellow leaf roll phytoplasma (PYLR) | 552 bps | |
X-IF | b27166 | KJ940007 | MH279543 | ESFY | Candidatus Phytoplasma prunorum European stone fruit yellows phytoplasma (ESFY) | 552 bps | |
XI-ID | b31184 | MH279493 | KR020685 | SCWL | Candidatus Phytoplasma oryzae (SCWL) | 552 bps | |
XII-I(B/C)B | b26419 | NC_021236 | NC_021236 | NZSb11 | Candidatus Phytoplasma australiense Strawberry lethal yellows phytoplasma (NZSb11) | 552 bps | |
XII-IA | b27168 | KJ939979 | MH279537 | BN44948 | Candidatus Phytoplasma solani Bois noir phytoplasma (BN44948) | 552 bps | |
XIII-(A/I)I | b27178 | KT444662 | KT444665 (A); KT444664 (I) | MPV-S83 | Candidatus Phytoplasma sp. Mexican periwinkle virescence (MPV-S83) | 552 bps | |
XIV-IA | b27180 | KF383984 | KF383980 | AL85/11 | Candidatus Phytoplasma cynodontis Bermuda white leaf phytoplasma (AL85/11) | 555 bps | |
XIV-IC | b27183 | KF383985 | KF383981 | RS59/11 | Candidatus Phytoplasma cynodontis Bermuda white leaf phytoplasma (RS59/11) | 555 bps | |
XV-IB | b31186 | MH279494 | KX810334 | PeruPBT | Candidatus Phytoplasma brasiliense (PeruPBT) | 555 bps | |
XXI-IB | b35242 | VIAE01000001.1 | KU242428 | MDPP | Candidatus Phytoplasma pini strain (MDPP) | 552 bps |
Subgroup ID | CpnDB ID | Description | AluI | BfaI | HinfI | HpaI | MseI | RsaI | TaqI |
---|---|---|---|---|---|---|---|---|---|
I-I(E/AI)AI | b27454 | Candidatus Phytoplasma asteris Blueberry stunt phytoplasma (BbSP) | Number of Bands: 6 Band Sizes: [58,36,30,351,39,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 7 Band Sizes: [100,148,45,173,57,13,16] | Number of Bands: 4 Band Sizes: [307,101,17,127] | Number of Bands: 1 Band Sizes: [552] |
I-IA | b27096 | Candidatus Phytoplasma asteris Allium cepa phytoplasma (O2L) | Number of Bands: 6 Band Sizes: [58,36,30,351,39,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 6 Band Sizes: [100,148,218,57,13,16] | Number of Bands: 4 Band Sizes: [307,55,63,127] | Number of Bands: 1 Band Sizes: [552] |
I-IB | b27105 | Candidatus Phytoplasma asteris Linum usitatissimum phytoplasma (SF1) | Number of Bands: 7 Band Sizes: [58,36,30,351,6,33,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 6 Band Sizes: [100,148,218,57,13,16] | Number of Bands: 5 Band Sizes: [307,55,46,17,127] | Number of Bands: 1 Band Sizes: [552] |
I-IC | b27144 | Candidatus Phytoplasma asteris Aster yellows phytoplasma (AY-Col) | Number of Bands: 6 Band Sizes: [58,36,30,351,39,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 5 Band Sizes: [248,218,57,13,16] | Number of Bands: 4 Band Sizes: [362,46,17,127] | Number of Bands: 1 Band Sizes: [552] |
I-IF | b27145 | Candidatus Phytoplasma asteris Aster yellows phytoplasma (CVB) | Number of Bands: 5 Band Sizes: [58,36,381,39,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 6 Band Sizes: [100,148,218,57,13,16] | Number of Bands: 5 Band Sizes: [307,55,46,17,127] | Number of Bands: 1 Band Sizes: [552] |
I-IIA | b27104 | Candidatus Phytoplasma asteris Grey dogwood stunt phytoplasma (GD) | Number of Bands: 5 Band Sizes: [58,66,351,39,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 2 Band Sizes: [92,460] | Number of Bands: 7 Band Sizes: [91,9,148,218,57,13,16] | Number of Bands: 4 Band Sizes: [362,46,17,127] | Number of Bands: 1 Band Sizes: [552] |
I-IIB | b27133 | Candidatus Phytoplasma asteris Aster yellows phytoplasma (AY-J) | Number of Bands: 5 Band Sizes: [58,417,6,33,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 7 Band Sizes: [100,25,123,218,57,13,16] | Number of Bands: 5 Band Sizes: [307,55,46,17,127] | Number of Bands: 1 Band Sizes: [552] |
I-IIIB | b27135 | Candidatus Phytoplasma asteris Maize bushy stunt phytoplasma (MBS-Ver) | Number of Bands: 6 Band Sizes: [58,36,381,6,33,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 7 Band Sizes: [100,25,123,218,57,13,16] | Number of Bands: 5 Band Sizes: [307,55,46,17,127] | Number of Bands: 1 Band Sizes: [552] |
I-IP | b27151 | Candidatus Phytoplasma asteris Populus decline phytoplasma (PopD) | Number of Bands: 6 Band Sizes: [58,36,30,351,39,38] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 5 Band Sizes: [100,148,275,13,16] | Number of Bands: 4 Band Sizes: [307,101,17,127] | Number of Bands: 1 Band Sizes: [552] |
I-IVB | b27138 | Candidatus Phytoplasma asteris Maize bushy stunt phytoplasma (MBS-Pueb) | Number of Bands: 5 Band Sizes: [58,36,381,39,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 7 Band Sizes: [100,25,123,218,57,13,16] | Number of Bands: 5 Band Sizes: [307,55,46,17,127] | Number of Bands: 1 Band Sizes: [552] |
I-VB | b27139 | Candidatus Phytoplasma asteris Iceland poppy yellows phytoplasma (IPY) | Number of Bands: 7 Band Sizes: [58,36,30,351,6,33,38] | Number of Bands: 2 Band Sizes: [455,97] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 6 Band Sizes: [100,148,218,57,13,16] | Number of Bands: 4 Band Sizes: [307,101,17,127] | Number of Bands: 1 Band Sizes: [552] |
II-IA | b27152 | Candidatus Phytoplasma sp. Peanut witches-broom phytoplasma NTU2011 (PnWB) | Number of Bands: 6 Band Sizes: [43,54,15,15,87,341] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 5 Band Sizes: [24,238,93,126,74] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 9 Band Sizes: [62,81,108,110,46,18,23,90,17] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 1 Band Sizes: [555] |
II-IC | b31187 | Candidatus Phytoplasma aurantifolia (R018) | Number of Bands: 6 Band Sizes: [43,69,79,23,165,176] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 5 Band Sizes: [24,238,93,126,74] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 11 Band Sizes: [62,14,67,108,110,27,19,18,23,90,17] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 4 Band Sizes: [161,150,108,136] |
IV-IA | b34437 | Candidatus Phytoplasma palmae (Cocos nucifera phytoplasma) | Number of Bands: 4 Band Sizes: [13,51,30,458] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 4 Band Sizes: [49,210,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 9 Band Sizes: [26,12,50,358,20,34,15,21,16] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 1 Band Sizes: [552] |
IV-IC | b32834 | Candidatus Phytoplasma cocostanzaniae (TagTall) | Number of Bands: 7 Band Sizes: [64,30,23,52,42,6,335] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 8 Band Sizes: [38,234,21,153,54,15,21,16] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 2 Band Sizes: [158,394] |
IV-IE | b32836 | Candidatus Phytoplasma palmae (Palm-A-DR) | Number of Bands: 4 Band Sizes: [13,81,117,341] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 4 Band Sizes: [49,210,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 9 Band Sizes: [26,12,50,358,20,34,15,21,16] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 1 Band Sizes: [552] |
IX-IA | b27158 | Candidatus Phytoplasma phoenicium Brazilian Huanglongbing phytoplasma (Cr) | Number of Bands: 6 Band Sizes: [64,30,30,87,165,176] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 6 Band Sizes: [47,27,174,267,21,16] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 2 Band Sizes: [140,412] |
IX-IB | b27157 | Candidatus Phytoplasma phoenicium Almond witches-broom (SA213) | Number of Bands: 7 Band Sizes: [64,30,30,87,165,171,5] | Number of Bands: 2 Band Sizes: [283,269] | Number of Bands: 2 Band Sizes: [259,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 5 Band Sizes: [47,27,372,90,16] | Number of Bands: 2 Band Sizes: [293,259] | Number of Bands: 3 Band Sizes: [99,59,394] |
IX-IJ | b31188 | Candidatus Phytoplasma phoenicium (ChicBS) | Number of Bands: 6 Band Sizes: [64,30,117,165,171,5] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 5 Band Sizes: [47,27,441,21,16] | Number of Bands: 2 Band Sizes: [293,259] | Number of Bands: 3 Band Sizes: [140,18,394] |
V-IC | b27155 | Candidatus Phytoplasma sp. rubi Rubus stunt phytoplasma (RS) | Number of Bands: 5 Band Sizes: [13,81,66,315,77] | Number of Bands: 2 Band Sizes: [70,482] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 14 Band Sizes: [38,9,27,15,249,41,25,9,9,21,23,34,35,17] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 3 Band Sizes: [362,6,184] |
VII-IA | b27156 | Candidatus Phytoplasma fraxini Ash yellows phytoplasma (AshY) | Number of Bands: 5 Band Sizes: [13,81,66,189,203] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 3 Band Sizes: [24,235,293] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 12 Band Sizes: [59,11,4,47,172,45,66,9,87,14,21,17] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 1 Band Sizes: [552] |
X-IA | b27159 | Candidatus Phytoplasma mali Apple proliferation phytoplasma (AP) | Number of Bands: 3 Band Sizes: [13,156,383] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 2 Band Sizes: [339,213] | Number of Bands: 6 Band Sizes: [38,210,90,128,70,16] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 2 Band Sizes: [362,190] |
X-IC | b27165 | Candidatus Phytoplasma pyri Peach yellow leaf roll phytoplasma (PYLR) | Number of Bands: 3 Band Sizes: [13,156,383] | Number of Bands: 2 Band Sizes: [500,52] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 5 Band Sizes: [248,90,128,70,16] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 2 Band Sizes: [158,394] |
X-IF | b27166 | Candidatus Phytoplasma prunorum European stone fruit yellows phytoplasma (ESFY) | Number of Bands: 3 Band Sizes: [13,156,383] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 8 Band Sizes: [38,210,90,41,67,20,70,16] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 1 Band Sizes: [552] |
XI-ID | b31184 | Candidatus Phytoplasma oryzae (SCWL) | Number of Bands: 2 Band Sizes: [13,539] | Number of Bands: 3 Band Sizes: [10,375,167] | Number of Bands: 4 Band Sizes: [24,235,219,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 10 Band Sizes: [74,14,34,126,45,153,20,42,28,16] | Number of Bands: 3 Band Sizes: [383,121,48] | Number of Bands: 1 Band Sizes: [552] |
XII-I(B/C)B | b26419 | Candidatus Phytoplasma australiense Strawberry lethal yellows phytoplasma (NZSb11) | Number of Bands: 4 Band Sizes: [97,363,54,38] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 6 Band Sizes: [24,25,210,192,27,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 8 Band Sizes: [38,210,119,79,20,57,13,16] | Number of Bands: 2 Band Sizes: [408,144] | Number of Bands: 1 Band Sizes: [552] |
XII-IA | b27168 | Candidatus Phytoplasma solani Bois noir phytoplasma (BN44948) | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 2 Band Sizes: [70,482] | Number of Bands: 6 Band Sizes: [24,25,210,192,52,49] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 7 Band Sizes: [38,36,174,119,18,151,16] | Number of Bands: 2 Band Sizes: [293,259] | Number of Bands: 3 Band Sizes: [86,168,298] |
XIII-(A/I)I | b27178 | Candidatus Phytoplasma sp. Mexican periwinkle virescence (MPV-S83) | Number of Bands: 7 Band Sizes: [13,104,28,27,45,258,77] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 6 Band Sizes: [24,235,90,102,27,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 9 Band Sizes: [38,36,174,119,79,20,57,13,16] | Number of Bands: 3 Band Sizes: [408,123,21] | Number of Bands: 2 Band Sizes: [86,466] |
XIV-IA | b27180 | Candidatus Phytoplasma cynodontis Bermuda white leaf phytoplasma (AL85/11) | Number of Bands: 4 Band Sizes: [13,156,207,179] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 3 Band Sizes: [259,222,74] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 10 Band Sizes: [38,36,14,34,126,221,42,6,21,17] | Number of Bands: 2 Band Sizes: [507,48] | Number of Bands: 2 Band Sizes: [488,67] |
XIV-IC | b27183 | Candidatus Phytoplasma cynodontis Bermuda white leaf phytoplasma (RS59/11) | Number of Bands: 4 Band Sizes: [13,156,207,179] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 4 Band Sizes: [242,17,222,74] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 9 Band Sizes: [74,14,34,126,221,42,6,21,17] | Number of Bands: 2 Band Sizes: [507,48] | Number of Bands: 2 Band Sizes: [488,67] |
XV-IB | b31186 | Candidatus Phytoplasma brasiliense (PeruPBT) | Number of Bands: 6 Band Sizes: [43,69,102,58,107,176] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 5 Band Sizes: [24,238,93,126,74] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 11 Band Sizes: [62,14,48,19,108,156,18,23,21,69,17] | Number of Bands: 1 Band Sizes: [555] | Number of Bands: 2 Band Sizes: [419,136] |
XXI-IB | b35242 | Candidatus Phytoplasma pini strain (MDPP) | Number of Bands: 3 Band Sizes: [13,198,341] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 3 Band Sizes: [24,454,74] | Number of Bands: 1 Band Sizes: [552] | Number of Bands: 9 Band Sizes: [38,36,14,184,194,42,7,21,16] | Number of Bands: 2 Band Sizes: [504,48] | Number of Bands: 1 Band Sizes: [552] |
Cpn60 UT Subgroups | I-I(E/AI)AI | I-IA | I-IB | I-IC | I-IF | I-IIA | I-IIB | I-IIIB | I-IP | I-IVB | I-VB | II-IA | II-IC | IV-IA | IV-IC | IV-IE | IX-IA | IX-IB | IX-IJ | V-IC | VII-IA | X-IA | X-IC | X-IF | XI-ID | XII-I(B/C)B | XII-IA | XIII-(A/I)I | XIV-IA | XIV-IC | XV-IB | XXI-IB |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
I-I(E/AI)AI | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-IA | 0.79 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-IB | 0.76 | 0.88 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-IC | 0.79 | 0.74 | 0.75 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-IF | 0.82 | 0.81 | 0.82 | 0.81 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-IIA | 0.61 | 0.68 | 0.69 | 0.72 | 0.67 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-IIB | 0.61 | 0.72 | 0.86 | 0.64 | 0.75 | 0.62 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-IIIB | 0.64 | 0.75 | 0.88 | 0.67 | 0.82 | 0.61 | 0.94 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-IP | 0.85 | 0.71 | 0.68 | 0.71 | 0.74 | 0.52 | 0.52 | 0.55 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-IVB | 0.76 | 0.75 | 0.76 | 0.79 | 0.94 | 0.61 | 0.82 | 0.88 | 0.68 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
I-VB | 0.82 | 0.85 | 0.94 | 0.72 | 0.75 | 0.67 | 0.79 | 0.82 | 0.74 | 0.69 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
II-IA | 0.08 | 0.04 | 0.04 | 0.09 | 0.08 | 0.04 | 0.04 | 0.04 | 0.09 | 0.08 | 0.04 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
II-IC | 0.07 | 0.04 | 0.04 | 0.08 | 0.08 | 0.04 | 0.04 | 0.04 | 0.08 | 0.07 | 0.04 | 0.60 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
IV-IA | 0.26 | 0.18 | 0.17 | 0.27 | 0.22 | 0.09 | 0.13 | 0.13 | 0.33 | 0.22 | 0.18 | 0.04 | 0.04 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
IV-IC | 0.29 | 0.21 | 0.24 | 0.30 | 0.25 | 0.12 | 0.21 | 0.20 | 0.35 | 0.24 | 0.25 | 0.08 | 0.11 | 0.40 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
IV-IE | 0.22 | 0.14 | 0.13 | 0.23 | 0.22 | 0.09 | 0.13 | 0.13 | 0.28 | 0.22 | 0.13 | 0.09 | 0.04 | 0.86 | 0.36 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
IX-IA | 0.22 | 0.28 | 0.27 | 0.23 | 0.18 | 0.18 | 0.23 | 0.22 | 0.29 | 0.18 | 0.27 | 0.09 | 0.16 | 0.29 | 0.41 | 0.24 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
IX-IB | 0.13 | 0.18 | 0.17 | 0.13 | 0.09 | 0.09 | 0.13 | 0.13 | 0.14 | 0.09 | 0.17 | 0.09 | 0.12 | 0.14 | 0.22 | 0.09 | 0.48 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
IX-IJ | 0.22 | 0.27 | 0.26 | 0.23 | 0.18 | 0.18 | 0.22 | 0.22 | 0.28 | 0.17 | 0.27 | 0.04 | 0.12 | 0.24 | 0.40 | 0.24 | 0.63 | 0.60 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
V-IC | 0.11 | 0.15 | 0.15 | 0.12 | 0.11 | 0.19 | 0.19 | 0.19 | 0.12 | 0.15 | 0.15 | 0.11 | 0.14 | 0.24 | 0.26 | 0.28 | 0.29 | 0.12 | 0.24 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
VII-IA | 0.20 | 0.21 | 0.20 | 0.17 | 0.17 | 0.25 | 0.21 | 0.20 | 0.22 | 0.16 | 0.21 | 0.08 | 0.11 | 0.27 | 0.25 | 0.31 | 0.36 | 0.13 | 0.31 | 0.42 | 1.00 | - | - | - | - | - | - | - | - | - | - | - |
X-IA | 0.23 | 0.14 | 0.14 | 0.24 | 0.23 | 0.14 | 0.14 | 0.14 | 0.29 | 0.23 | 0.14 | 0.14 | 0.12 | 0.30 | 0.37 | 0.30 | 0.26 | 0.10 | 0.20 | 0.25 | 0.23 | 1.00 | - | - | - | - | - | - | - | - | - | - |
X-IC | 0.28 | 0.20 | 0.19 | 0.34 | 0.29 | 0.14 | 0.19 | 0.19 | 0.30 | 0.28 | 0.19 | 0.14 | 0.13 | 0.31 | 0.43 | 0.31 | 0.26 | 0.20 | 0.26 | 0.21 | 0.24 | 0.65 | 1.00 | - | - | - | - | - | - | - | - | - |
X-IF | 0.32 | 0.24 | 0.23 | 0.33 | 0.33 | 0.19 | 0.23 | 0.23 | 0.39 | 0.32 | 0.23 | 0.14 | 0.17 | 0.45 | 0.42 | 0.45 | 0.31 | 0.15 | 0.25 | 0.29 | 0.33 | 0.74 | 0.65 | 1.00 | - | - | - | - | - | - | - | - |
XI-ID | 0.33 | 0.21 | 0.20 | 0.30 | 0.29 | 0.17 | 0.21 | 0.20 | 0.30 | 0.29 | 0.21 | 0.08 | 0.11 | 0.36 | 0.29 | 0.36 | 0.18 | 0.09 | 0.18 | 0.19 | 0.29 | 0.28 | 0.33 | 0.42 | 1.00 | - | - | - | - | - | - | - |
XII-I(B/C)B | 0.33 | 0.30 | 0.29 | 0.35 | 0.34 | 0.26 | 0.30 | 0.29 | 0.36 | 0.33 | 0.30 | 0.13 | 0.08 | 0.32 | 0.26 | 0.32 | 0.19 | 0.09 | 0.18 | 0.12 | 0.17 | 0.29 | 0.20 | 0.43 | 0.26 | 1.00 | - | - | - | - | - | - |
XII-IA | 0.13 | 0.13 | 0.13 | 0.13 | 0.13 | 0.09 | 0.13 | 0.13 | 0.14 | 0.13 | 0.13 | 0.09 | 0.08 | 0.19 | 0.17 | 0.19 | 0.19 | 0.18 | 0.23 | 0.20 | 0.09 | 0.15 | 0.15 | 0.20 | 0.13 | 0.36 | 1.00 | - | - | - | - | - |
XIII-(A/I)I | 0.26 | 0.23 | 0.22 | 0.27 | 0.26 | 0.19 | 0.23 | 0.22 | 0.27 | 0.26 | 0.23 | 0.08 | 0.07 | 0.24 | 0.26 | 0.24 | 0.24 | 0.08 | 0.20 | 0.21 | 0.19 | 0.29 | 0.26 | 0.38 | 0.26 | 0.50 | 0.31 | 1.00 | - | - | - | - |
XIV-IA | 0.04 | 0.00 | 0.00 | 0.04 | 0.04 | 0.00 | 0.00 | 0.00 | 0.04 | 0.04 | 0.00 | 0.17 | 0.19 | 0.18 | 0.13 | 0.18 | 0.05 | 0.04 | 0.05 | 0.19 | 0.17 | 0.19 | 0.15 | 0.19 | 0.30 | 0.09 | 0.09 | 0.15 | 1.00 | - | - | - |
XIV-IC | 0.04 | 0.00 | 0.00 | 0.04 | 0.04 | 0.00 | 0.00 | 0.00 | 0.04 | 0.04 | 0.00 | 0.17 | 0.19 | 0.18 | 0.09 | 0.18 | 0.05 | 0.00 | 0.05 | 0.15 | 0.17 | 0.14 | 0.15 | 0.14 | 0.34 | 0.04 | 0.00 | 0.08 | 0.87 | 1.00 | - | - |
XV-IB | 0.12 | 0.08 | 0.08 | 0.12 | 0.12 | 0.08 | 0.08 | 0.08 | 0.12 | 0.12 | 0.08 | 0.55 | 0.68 | 0.08 | 0.12 | 0.08 | 0.13 | 0.00 | 0.08 | 0.14 | 0.16 | 0.09 | 0.09 | 0.09 | 0.12 | 0.08 | 0.08 | 0.07 | 0.24 | 0.24 | 1.00 | - |
XXI-IB | 0.22 | 0.19 | 0.18 | 0.23 | 0.23 | 0.14 | 0.18 | 0.18 | 0.29 | 0.22 | 0.18 | 0.14 | 0.12 | 0.34 | 0.32 | 0.39 | 0.25 | 0.10 | 0.24 | 0.20 | 0.32 | 0.31 | 0.26 | 0.41 | 0.41 | 0.33 | 0.24 | 0.33 | 0.37 | 0.28 | 0.17 | 1.00 |
Program | Data | Options | Summary |
---|---|---|---|
Multiple Sequence Alignment (CLUSTALW) | MEG File | Alignment Options | Alignment Summary |
Neighbor-Joining Tree (MEGA) | XML File | Tree Options | Tree Summary |
Subgroup ID | I-I(E/AI)AI |
CpnDB ID | b27454 |
Genbank Accession ID | MH279496 |
Description | Candidatus Phytoplasma asteris Blueberry stunt phytoplasma (BbSP) |
Strain Name | BbSP |
16S Group/Subgroup | 16SrI-E |
16S Genbank Accession ID | MH279523 (E); MH279522 (AI) |
Host Latin Name | Vaccinium corymbosum |
Host Common Name | blueberry |
Country of Origin | Canada (Nova Scotia) |
References | Perez-Lopez et al. Int. J. Syst. Evol. Microbiol., 66(12), 5600-5613, 2016 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGTTTTGATGTAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGTATTGAGTTAGCTTCATTAACAGTTGCCAAAAAACTT TTAGCTAAATCTAAAAAAGTAGACGCCCAAGAAGATATTCAAAATGTGGCTTCTGTTTCA TCAGGTAGTCAAGAAATTGGTAAAATCATTGCCCAAGCGATGCAAAAAGTAGGTAAAGAT GGAGTTATTAATGTTGATGAATCCAAAGGTTTTGAAACAGAATTAGAAGTTGTTAAAGGA TTGCAGTACGATAAAGGATACGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGCATGACA GTAAATTTAGAAAATGCGTTAGTCTTAGTAACTGATCATAAAATTAGTACTGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTGTTAATTGTAGCTGAA TCAGTGGAAAATGAAGTTTTAGGTGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDVIDAGANPVLVKEGIELASLTVAKKLLAKSKKVDAQEDIQNVASVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVKGLQYDKGYASPYFVSDRESMT VNLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAESVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-IA |
CpnDB ID | b27096 |
Genbank Accession ID | KJ939998 |
Description | Candidatus Phytoplasma asteris Allium cepa phytoplasma (O2L) |
Strain Name | O2L |
16S Group/Subgroup | 16SrI-A |
16S Genbank Accession ID | MH279536 |
Host Latin Name | Allium cepa |
Host Common Name | onion |
Country of Origin | Canada |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGTTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAGTTAGCTTCATTAACAGTTGCAAAAAAACTT TTAGCTAAATCTAAAAAAGTAGACGACCAAGAAGATATTCAAAATGTGGCTTCTGTTTCA TCAGGTAGTCAAGAAATTGGTAAAATCATTGCCCAAGCGATGCAAAAAGTAGGTAAAGAT GGAGTTATTAATGTTGATGAATCCAAAGGTTTTGAAACAGAATTAGAAGTTGTTGAAGGA TCGCAGTACGATAAAGGATATGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGTATGACA GTACATTTAGAAAATGCGTTAGTTTTAGTAACTGATCATAAAATTAGCACCGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTGTTAATTGTAGCTGAA GCAGTGGAAAATGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELASLTVAKKLLAKSKKVDDQEDIQNVASVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVEGSQYDKGYASPYFVSDRESMT VHLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAEAVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-IB |
CpnDB ID | b27105 |
Genbank Accession ID | KJ940013 |
Description | Candidatus Phytoplasma asteris Linum usitatissimum phytoplasma (SF1) |
Strain Name | SF1 |
16S Group/Subgroup | 16SrI-B |
16S Genbank Accession ID | MH279534 |
Host Latin Name | Linum usitatissimum |
Host Common Name | flax |
Country of Origin | Canada (Saskatchewan) |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGGTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAGTTAGCTGCATTAACAGTTGCCAAAAAACTT TTAGCTAAATCTAAAAAAGTAGACGCCCAAGAAGATATTCAAAATGTGGCTGCTGTTTCA TCAGGTAGTCAAGAAATTGGTAAAATCATTGCCCAAGCGATGCAAAAAGTAGGAAAAGAT GGAGTTATTAATGTTGATGAATCCAAAGGTTTTGAAACAGAATTAGAAGTTGTTGAAGGA TTGCAGTACGATAAAGGATATGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGTATGACA GTACAGTTAGAAAATGCGTTAGTTTTAGTAACTGATCATAAAATTAGTACTGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTATTAATTGTAGCTGAA GCTGTGGAAAATGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELAALTVAKKLLAKSKKVDAQEDIQNVAAVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVEGLQYDKGYASPYFVSDRESMT VQLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAEAVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-IC |
CpnDB ID | b27144 |
Genbank Accession ID | KJ939994 |
Description | Candidatus Phytoplasma asteris Aster yellows phytoplasma (AY-Col) |
Strain Name | AY-Col |
16S Group/Subgroup | 16SrI-R (F=0.94) |
16S Genbank Accession ID | MH279535 |
Host Latin Name | Catharanthus roseus |
Host Common Name | periwinkle |
Country of Origin | Italy |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACCGTTTTGGCACAAAGTATGATTCATCGTGGTTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAGTTAGCTTCATCAACAGTTGCCAAAAAACTT TTAGCTAAATCTAAAAAAGTAGACGCCCAAGAAGATATTCAAAATGTGGCTTCTGTTTCA TCAGGTAGTCAAGAAATTGGTAAAATCATTGCCCAAGCGATGCAAAAAGTAGGTAAAGAT GGAGTTATTAATGTTGATGAATCCAAAGGTTTTGAAACAGAATTAGAAGTTGTTGAAGGA TTTCAGTATGATAAAGGATATGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGTATGACA GTACATTTAGAAAATGCGTTAGTTTTAGTAACTGATCATAAAATTAGTACTGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTGTTAATTGTAGCTGAA TCAGTGGAAAATGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELASSTVAKKLLAKSKKVDAQEDIQNVASVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVEGFQYDKGYASPYFVSDRESMT VHLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAESVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-IF |
CpnDB ID | b27145 |
Genbank Accession ID | KJ939995 |
Description | Candidatus Phytoplasma asteris Aster yellows phytoplasma (CVB) |
Strain Name | CVB |
16S Group/Subgroup | 16SrI-F |
16S Genbank Accession ID | MH279545 |
Host Latin Name | Catharanthus roseus |
Host Common Name | periwinkle |
Country of Origin | Italy |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGTTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAGTTAGCTTCATTAACAATTGCCAAAAAACTT TTATCTAAATCTAAAAAAGTAGACGCCCAAGAAGATATTCAAAATGTGGCTTCTGTTTCA TCAGGTAGTAAAGAAATTGGAAAAATCATTGCCCAAGCGATGCAAAAAGTAGGTAAAGAT GGAGTTATTAATGTTGATGAATCCAAAGGTTTTGAAACAGAATTAGAAGTTGTTGAAGGA TTGCAGTACGATAAAGGATATGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGCATGACA GTACATTTAGAAAATGCTTTAGTTTTAGTAACTGATCATAAAATTAGTACTGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTGTTAATTGTAGCTGAA TCAGTGGAAAATGAAGTTTTAGGTGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELASLTIAKKLLSKSKKVDAQEDIQNVASVS SGSKEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVEGLQYDKGYASPYFVSDRESMT VHLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAESVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-IIA |
CpnDB ID | b27104 |
Genbank Accession ID | AB599694 |
Description | Candidatus Phytoplasma asteris Grey dogwood stunt phytoplasma (GD) |
Strain Name | GD |
16S Group/Subgroup | 16SrI-A |
16S Genbank Accession ID | DQ112021 |
Host Latin Name | Cornus racemosa |
Host Common Name | Gray dogwood |
Country of Origin | USA |
References | Mitrovic et al. Ann Appl Biol 2011;159(1):41-48, 2011 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGTTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAGTTAACTTCATTAACAGTTGCCAAAAAACTT TTAGCTAAATCTAAAAAAGTAGACGTCCAAGAAGATATTCAAAATGTGGCTTCTGTTTCA TCAGGTAGTCAAGAAATTGGTAAAATCATTGCCCAAGCGATGCAAAAAGTAGGTAAAGAT GGAGTTATTAATGTTGATGAATCTAAAGGTTTTGAAACAGAATTAGAAGTTGTTGAAGGA TTGCAATACGATAAAGGATATGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGTATGACA GTACATTTAGAAAATGCGTTGGTTTTAGTAACTGATCATAAAATTAGTACTGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTGTTAATTGTAGCTGAA GCAGTGGAAAATGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELTSLTVAKKLLAKSKKVDVQEDIQNVASVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVEGLQYDKGYASPYFVSDRESMT VHLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAEAVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-IIB |
CpnDB ID | b27133 |
Genbank Accession ID | AB599689 |
Description | Candidatus Phytoplasma asteris Aster yellows phytoplasma (AY-J) |
Strain Name | AY-J |
16S Group/Subgroup | 16SrI-B |
16S Genbank Accession ID | HM590616 |
Host Latin Name | Catharanthus roseus |
Host Common Name | periwinkle |
Country of Origin | France |
References | Mitrovic et al. Ann Appl Biol 2011;159(1):41-48, 2011 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGGTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAGTTAGCAGCATTAACAGTTGCCAAAAAACTT TTAGTTAAATCTAAAAAAGTAGACGCCCAAGAAGATATTCAAAATGTGGCTGCTGTTTCA TCAGGTAGTCAAGAAATTGGTAAAATCATTGCCCAAGCGATGCAAAAAGTAGGAAAAGAT GGAGTTATTAATGTTGATGAATCCAAAGGTTTTGAAACAGAATTAGAAGTTGTTGAAGGA TTGCAGTACGATAAAGGATATGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGTATGACA GTACAGTTAGAAAATGCGTTAGTTTTAGTAACTGATCATAAAATTAGTACTGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTATTAATTGTAGCTGAA GCTGTGGAAAATGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELAALTVAKKLLVKSKKVDAQEDIQNVAAVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVEGLQYDKGYASPYFVSDRESMT VQLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAEAVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-IIIB |
CpnDB ID | b27135 |
Genbank Accession ID | KT444673 |
Description | Candidatus Phytoplasma asteris Maize bushy stunt phytoplasma (MBS-Ver) |
Strain Name | MBS-Ver |
16S Group/Subgroup | 16SrI-B |
16S Genbank Accession ID | KT444671 |
Host Latin Name | Zea mays |
Host Common Name | corn |
Country of Origin | Mexico |
References | Perez-Lopez and Dumonceaux Int. J. Syst. Evol. Microbiol., 66(11), 4406-4415, doi:10.1099/ijsem.0.001365, 2016 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGGTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAGTTAGCTGCATTAACAGTTGCCAAAAAACTT TTAGTTAAATCTAAAAAAGTAGACGCCCAAGAAGATATTCAAAATGTGGCTGCTGTTTCA TCAGGTAGTCAAGAAATTGGTAAAATCATTGCCCAAGCGATGCAAAAAGTAGGAAAAGAT GGAGTTATTAATGTTGATGAATCCAAAGGTTTTGAAACAGAATTAGAAGTTGTTGAAGGA TTGCAGTACGATAAAGGATATGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGTATGACA GTACAGTTAGAAAATGCGTTAGTTTTAGTAACTGATCATAAAATTAGTACTGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTATTAATTGTAGCTGAA GCTGTGGAAAATGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELAALTVAKKLLVKSKKVDAQEDIQNVAAVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVEGLQYDKGYASPYFVSDRESMT VQLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAEAVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-IP |
CpnDB ID | b27151 |
Genbank Accession ID | AB599710 |
Description | Candidatus Phytoplasma asteris Populus decline phytoplasma (PopD) |
Strain Name | PopD |
16S Group/Subgroup | 16SrI-P |
16S Genbank Accession ID | HM590626 |
Host Latin Name | Populus sp. |
Host Common Name | cottonwood |
Country of Origin | Serbia |
References | Mitrovic et al. Ann Appl Biol 2011;159(1):41-48, 2011 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGTTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAATTAGCTTCATTAACAGTTGCCCAAAAACTT TTAGCTAAATCTAAAAAAGTAGATGCTCAAGAAGATATTCAAAATGTGGCTGCTGTTTCA TCAGGTAGCCAAGAAATTGGTAAAATTATTGCTCAAGCAATGCAAAAAGTAGGTAAAGAT GGAGTTATTAATGTTGATGAATCAAAAGGTTTTGAAACAGAATTAGAAGTTGTTGGTGGT TTACAGTACGATAAAGGATATGCTTCTCCTTATTTTGTTTCTGATAGAGAAAGCATGACA GTAGAATTAGAAAATCCTTTGGTTTTAGTAACTGATCATAAAATTAGTACCGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTGGTAAAAGCATCAAGACCTTTGTTGATTTTAGCTGAA TCAGTGGAAAATGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTGGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELASLTVAQKLLAKSKKVDAQEDIQNVAAVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVGGLQYDKGYASPYFVSDRESMT VELENPLVLVTDHKISTVQEIVPILEEVVKASRPLLILAESVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-IVB |
CpnDB ID | b27138 |
Genbank Accession ID | KT444672 |
Description | Candidatus Phytoplasma asteris Maize bushy stunt phytoplasma (MBS-Pueb) |
Strain Name | MBS-Pueb |
16S Group/Subgroup | 16SrI-B |
16S Genbank Accession ID | KT444670 |
Host Latin Name | Zea mays |
Host Common Name | corn |
Country of Origin | Mexico |
References | Perez-Lopez and Dumonceaux Int. J. Syst. Evol. Microbiol., 66(11), 4406-4415, doi:10.1099/ijsem.0.001365, 2016 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGGTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAGTTAGCTGCATTAACAGTTGCCAAAAAACTT TTAGTTAAATCTAAAAAAGTAGACGCCCAAGAAGATATTCAAAATGTGGCTGCTGTTTCA TCAGGTAGTCAAGAAATTGGTAAAATCATTGCCCAAGCGATGCAAAAAGTAGGAAAAGAT GGAGTTATTAATGTTGATGAATCCAAAGGTTTTGAAACAGAATTAGAAGTTGTTGAAGGA TTGCAGTACGATAAAGGATATGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGTATGACA GTACAGTTAGAAAATGCGTTAGTTTTAGTAACTGATCATAAAATTAGTACTGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTATTAATTGTAGCTGAA TCTGTGGAAAATGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELAALTVAKKLLVKSKKVDAQEDIQNVAAVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVEGLQYDKGYASPYFVSDRESMT VQLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAESVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | I-VB |
CpnDB ID | b27139 |
Genbank Accession ID | AB242234 |
Description | Candidatus Phytoplasma asteris Iceland poppy yellows phytoplasma (IPY) |
Strain Name | IPY |
16S Group/Subgroup | 16SrI-B |
16S Genbank Accession ID | Not Available |
Host Latin Name | Papaver somniferum |
Host Common Name | poppy |
Country of Origin | Japan |
References | Alvarez, E., Mejía, J. F., Contaldo, N., Paltrinieri, S., Duduk, B., and Bertaccini, A. 2014. ‘Candidatus Phytoplasma asteris’ strains associated with oil palm lethal wilt in Colombia. Plant Dis. 98:311-318 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTGGCACAAAGTATGATTCATCGTGGGTTTGATGCAATTGATGCAGGAGCT AATCCTGTTTTAGTAAAAGAAGGAATTGAGTTAGCTGCATTAACAGTTGCCAAAAAACTT TTAGCTAAATCTAAAAAAGTAGACGCCCAAGAAGATATTCAAAATGTGGCTGCTGTTTCA TCAGGTAGTCAAGAAATTGGTAAAATCATTGCCCAAGCGATGCAAAAAGTAGGAAAAGAT GGAGTTATTAATGTTGATGAATCCAAAGGTTTTGAAACAGAATTAGAAGTTGTTGAAGGA TTGCAGTACGATAAAGGATATGCTTCTCCTTATTTTGTCTCTGATAGAGAAAGTATGACA GTAAAGTTAGAAAATGCGTTAGTTTTAGTAACTGATCATAAAATTAGTACTGTGCAAGAA ATTGTACCTATTTTGGAAGAAGTAGTAAAAGCATCTAGACCTTTATTAATTGTAGCTGAA GCTGTGGAAAATGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGAACTTTTAAT GTAGTTGTAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFDAIDAGANPVLVKEGIELAALTVAKKLLAKSKKVDAQEDIQNVAAVS SGSQEIGKIIAQAMQKVGKDGVINVDESKGFETELEVVEGLQYDKGYASPYFVSDRESMT VKLENALVLVTDHKISTVQEIVPILEEVVKASRPLLIVAEAVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | II-IA |
CpnDB ID | b27152 |
Genbank Accession ID | NZ_AMWZ00000000 |
Description | Candidatus Phytoplasma sp. Peanut witches-broom phytoplasma NTU2011 (PnWB) |
Strain Name | PnWB |
16S Group/Subgroup | 16SrII-A |
16S Genbank Accession ID | NZ_AMWZ00000000 |
Host Latin Name | Arachis hypogaea |
Host Common Name | peanut |
Country of Origin | Taiwan |
References | Chung et al. PLoS One 2013;8(4):e62770, 2013 |
Virtual Gel | |
Nucledotide UT Length | 555 bp |
Nucledotide UT Sequence | GCTGTTTTATTAGGTCAGAGTATGATTCGTAAAGGTTTTGAAGCTCTTGACACAGGCGGT TTTAAAGGTGTTCTTTTGAAACAAGGAATTTTAGAAGCTTCTCGTGTGGTAGCTAAGCAA CTTTTAGCTAAATCTCGTTCTGTTAATACCCAAGAAGAGATTGAGAATGTGGCTACTATT TCATCTGGTAGTGCGGAAACAGGAAAAATTGTAGCTGCTGCTATTGAAAAAGTAGGCAAA ACAGGAGTTGTTAATGTAGATGAATCTAAGAGTTTTGAAACTGTATTGGATGTTGTTGAA GGTATGCAATTTGATAAAGGTTACGTTTCACCTTATTTCGTTGTGAATAAAAAAGATTCT TTAATAGAATTAGAACAGGCTGCAATTTTGATTACCGATCATAAGATTAATAGTATATTT GAAATTAATCGTATTTTAGAATATTCATTAAGTAATAGAGTTCCTTTGTTGATTATTGCA GAATCTTTTGATAATGAAATGGTAAGTATTTTAGTTGCTAATAAAAAAGGTAATTATTTA AATGCAGTCGCAGTG |
Peptide UT Length | 185 aa |
Peptide UT Sequence | AVLLGQSMIRKGFEALDTGGFKGVLLKQGILEASRVVAKQLLAKSRSVNTQEEIENVATI SSGSAETGKIVAAAIEKVGKTGVVNVDESKSFETVLDVVEGMQFDKGYVSPYFVVNKKDS LIELEQAAILITDHKINSIFEINRILEYSLSNRVPLLIIAESFDNEMVSILVANKKGNYL NAVAV |
Subgroup ID | II-IC |
CpnDB ID | b31187 |
Genbank Accession ID | MH279495 |
Description | Candidatus Phytoplasma aurantifolia (R018) |
Strain Name | R018 |
16S Group/Subgroup | 16SrII-C |
16S Genbank Accession ID | MH266698 |
Host Latin Name | Citrus aurantiifolia |
Host Common Name | lime |
Country of Origin | Iran |
References | Muirhead,K.S., et al. Journal, reference info. |
Virtual Gel | |
Nucledotide UT Length | 555 bp |
Nucledotide UT Sequence | GCTGTTTTATTAGGTCAGAGTATGATTCGTAAAGGTTTTGAAGCTTTAGACACAGGTGGT TTTAAAGGGGTTCTTTTAAAACAAGGTATTTTAGAAGCATCTCGTGTAGTAGCTCAACAA CTTTTATCCAAATCTCGTTCTGTTAATACTCAAGAAGAAATCGAAAATGTTGCTACTATT TCGTCTGGTAGCTTAGAAACAGGAAAAATTGTAGCTGCTGCTATTGAAAAAGTAGGTAAA ACAGGAGTTGTTAATGTGGACGAATCTAAGAGTTTTGAAACTGTATTAGATGTTGTTGAA GGTATGCAATTCGAAAAAGGTTATGTGTCTCCTTATTTTGTAGTAAATCAAAAAGATTCT TTAATAGAATTAGAACAAGCTGCTATTTTAATTACTGATCATAAGATTAATAGTATATTC GAAATTAATCGTATTTTAGAATATTCATTAAGTAATAGAGTTCCTTTACTAATTATTGCT GAATCTTTTGATAATGAAATGGTAAGTATTTTGGTCGCTAATAAAAAAGGTAATTACTTA AATGCAGTTGCAGTT |
Peptide UT Length | 185 aa |
Peptide UT Sequence | AVLLGQSMIRKGFEALDTGGFKGVLLKQGILEASRVVAQQLLSKSRSVNTQEEIENVATI SSGSLETGKIVAAAIEKVGKTGVVNVDESKSFETVLDVVEGMQFEKGYVSPYFVVNQKDS LIELEQAAILITDHKINSIFEINRILEYSLSNRVPLLIIAESFDNEMVSILVANKKGNYL NAVAV |
Subgroup ID | IV-IA |
CpnDB ID | b34437 |
Genbank Accession ID | KY779619 |
Description | Candidatus Phytoplasma palmae (Cocos nucifera phytoplasma) |
Strain Name | Cocos nucifera phytoplasma |
16S Group/Subgroup | IV-A |
16S Genbank Accession ID | HQ613874 |
Host Latin Name | Cocos nucifera |
Host Common Name | Coconut |
Country of Origin | USA |
References | Córdova, I., Oropeza, C., Harrison, N., Ku-Rodríguez, S., Puch-Hau, C., Narváez, M., & Sáenz, L. (2019). Simultaneous detection of coconut lethal yellowing phytoplasmas (group 16SrIV) by real-time PCR assays using 16Sr- and GroEL-based TaqMan probes. Journal of Plant Pathology. doi:10.1007/s42161-019-00249-y |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTAGCTCAGTATATGATTAATAAAGGTTTTAAATTTGTTGAATCCGGTTCT AAAGCTGTTCTGCTTAGAGAAGGAATTTTAAAAGCTGCTGATTTAGTTGCTAAAAAACTT TTAGAAAAATCAAAACCTGTTGTAACGCAAGAGGATATTGAAAATATTGCTTCTATTTCT TCAGGACAAAAATCAATAGGTAAAATAATAGCCTCTGCTATGGAAAAGGTTACTAAAAAA GGTGTTATTAGTGTTGATGAATCTAAAGGTTTTGAAACAGAATTAGAAGTTGTTCAAGGG ATGCAATATGATAAAGGTTATGTTTCACCTCATTTTATTACTAATAAGGAAAATATGTCT ATTGATTTAGAAAAAGTATCTATTTTAGTTACTGATCATAAAATAAATAATATACATGAA ATTCGTTTTTTGTTAGAAGAAATAGTTAAATCTTCTATTCCTTTGTTAATTATTGCTGAT TCTTTTGAAACAGATGTTATTAATTCTTTAGTTTTTAATAAAATAAGCGGAGTTTTTAAT GTTGTTGCTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQYMINKGFKFVESGSKAVLLREGILKAADLVAKKLLEKSKPVVTQEDIENIASIS SGQKSIGKIIASAMEKVTKKGVISVDESKGFETELEVVQGMQYDKGYVSPHFITNKENMS IDLEKVSILVTDHKINNIHEIRFLLEEIVKSSIPLLIIADSFETDVINSLVFNKISGVFN VVAT |
Subgroup ID | IV-IC |
CpnDB ID | b32834 |
Genbank Accession ID | MH922781 |
Description | Candidatus Phytoplasma cocostanzaniae (TagTall) |
Strain Name | TagTall |
16S Group/Subgroup | 16SrIV-C |
16S Genbank Accession ID | MH922778 |
Host Latin Name | Cocos nucifera |
Host Common Name | coconut var. Tagnanan Tall |
Country of Origin | Tanzania |
References | Muirhead,K.S., et al. Journal, reference info. |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTAGCCCAATATATGATTCAAAAAGGTTTTAAATGTGTAAATTCTGGTTCA AAAGCTATTTTGATGAGAGAAGGAATTTTACAAGCTGCTCAAAAAGTTTCCCAAAAGCTT TTAGAAAAAACTAAACCTGTAGTTACTCAGGAAGATATCGAAAATATAGCTTCTATTTCA TCTGGTAGCAAAAATATAGGTAAAATTATAGCTTCAGCTATGGAAAAAGTTACTAAAAAA GGTGTTATTAGTGTTGATGAATCTAAAGGTTTTAAAACAGAATTAGAAGTCGTTAAGGGT ATGCAATATGATAAAGGTTATGTTTCGCCTCATTTTGTAACTAATAAAGAAAATATGTCT GTTGAAATGGAAAAATTATCTGTTTTAGTAACTGATCATAAAATTAGTAATATCCAAGAG ATACGTTCTATATTGGAAGAAATAGTTAAAACTTCTACTCCTTTGTTGATTATTGCTGAT TCAATAGAAACTGATATAATTAATACTCTTGTTTTTAATAAAATAAGTGGTGTTTTTAAC GTTGTTGCAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQYMIQKGFKCVNSGSKAILMREGILQAAQKVSQKLLEKTKPVVTQEDIENIASIS SGSKNIGKIIASAMEKVTKKGVISVDESKGFKTELEVVKGMQYDKGYVSPHFVTNKENMS VEMEKLSVLVTDHKISNIQEIRSILEEIVKTSTPLLIIADSIETDIINTLVFNKISGVFN VVAT |
Subgroup ID | IV-IE |
CpnDB ID | b32836 |
Genbank Accession ID | MH922783 |
Description | Candidatus Phytoplasma palmae (Palm-A-DR) |
Strain Name | Palm-A-DR |
16S Group/Subgroup | 16SrIV-E |
16S Genbank Accession ID | MH922780 |
Host Latin Name | Cocos nucifera |
Host Common Name | coconut |
Country of Origin | Dominican Republic |
References | Muirhead,K.S., et al. Journal, reference info. |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTAGCTCAATATATGATTAATAAAGGTTTTAAATTTGTTGAATCTGGTTCT AAAGCAGTTCTTCTTAGAGAAGGTATTTTAAAAGCTGCTGATTTAGTGTCTAAAAAACTT TTAGAAAAATCAAAATCTGTCGTAACGCAAGAAGATATTGAAAATATTGCTTCTATTTCT TCAGGACAAAAATCAATAGGTAAAATTATAGCTTCTGCTATGGAAAAAGTTACTAAAAAA GGTGTTATTAGTGTTGATGAATCTAAAGGTTTTGAAACAGAATTAGAAGTTGTTCAGGGT ATGAAATATGATAAAGGTTATGTTTCTCCTCATTTTATTACTAATAAAGAGAATATGTCT ATTGATTTAGAAAAAGTATCTATTTTAGTTACTGATCATAAAATAAATAATATACACGAA ATTCGTTTTTTGTTAGAAGAAATAGTTAAATCTTCTGTTCCTTTGTTAATTATTGCTGAT TCTTTTGAAACAGATGTTATTAATTCTTTAGTTTTTAATAAAATAAGTGGAGTTTTTAAT GTTGTTGCTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQYMINKGFKFVESGSKAVLLREGILKAADLVSKKLLEKSKSVVTQEDIENIASIS SGQKSIGKIIASAMEKVTKKGVISVDESKGFETELEVVQGMKYDKGYVSPHFITNKENMS IDLEKVSILVTDHKINNIHEIRFLLEEIVKSSVPLLIIADSFETDVINSLVFNKISGVFN VVAT |
Subgroup ID | IX-IA |
CpnDB ID | b27158 |
Genbank Accession ID | KJ939989 |
Description | Candidatus Phytoplasma phoenicium Brazilian Huanglongbing phytoplasma (Cr) |
Strain Name | Cr |
16S Group/Subgroup | 16SrIX-A |
16S Genbank Accession ID | Not Available |
Host Latin Name | Catharanthus roseus |
Host Common Name | periwinkle |
Country of Origin | Cuba |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCTACAGTATTAGCACAAAAAATGATTCATAAAGGATTTCAGTTTGTTAATTCTGGTGCT AAAGCTGTTTCTATTAAAGAAGGTATTATGAGAGCTTCCCAAGAAGTAGTATCAAAACTG TTAGCTAAATCAAAACCTGTCGAAACACAAAGTGATATTGAAAACGTAGCAACTATTTCT TCTGGTCAAAAAGATATAGGCCGTATTATAGCTTCGGCAATGGAAAAAGTTACTAAAAAA GGTGTTATTAACGTAGATGAATCTAAAGGATTTGAAACTGAACTTGAAGTAGTAAAAGGT TTGAAATATGATAAAGGTTATATTTCTCCTCATTTTGTCACCAACAAAGAAAATATGTCT GTAGAATTTGAACAAGCTTCAGTATTAGTTACAGATCATAAAATTAGTAATTTACAAGAA ATTCGTTCTATTTTAGAAGATGTAGTAAAAAATTCTACTCCTTTACTTATTATTGCTGCT TCTTTTGAAAATGACGTTATAGGTGCTTTAGTTTTTAATAAAATTAGCGGAGTATTTAAT GTAGTTGCTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQKMIHKGFQFVNSGAKAVSIKEGIMRASQEVVSKLLAKSKPVETQSDIENVATIS SGQKDIGRIIASAMEKVTKKGVINVDESKGFETELEVVKGLKYDKGYISPHFVTNKENMS VEFEQASVLVTDHKISNLQEIRSILEDVVKNSTPLLIIAASFENDVIGALVFNKISGVFN VVAT |
Subgroup ID | IX-IB |
CpnDB ID | b27157 |
Genbank Accession ID | KND62606 |
Description | Candidatus Phytoplasma phoenicium Almond witches-broom (SA213) |
Strain Name | SA213 |
16S Group/Subgroup | 16SrIX-B |
16S Genbank Accession ID | KM275491 |
Host Latin Name | Prunus dulcis |
Host Common Name | almond |
Country of Origin | Lebanon |
References | Quaglino et al. BMC Microbiol 15, 148, 2015 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCTACTGTATTAGCACAAAAAATGATACATAAAGGGTTTCAATTTGTTAATTCTGGTGCT AAAGCTGTTTCAATTAAAGAAGGAATTATAAAAGCTTCTCGAGAAGTAGTTACAAGACTT TTAGCTAAGTCAAAACCTATAGAAACACAAGGTGATATCGAAAACGTAGCCACTATTTCT TCTGGTCAAAAAGAAATAGGACATATTATAGCTTCAGCAATGGAGAAAGTGACTAAAAAA GGTGTTATTAGTGTAGATGAATCTAAAGGATTTGAAACTGAACTAGAAGTAGTACAAGGT TTGAAATATGATAAAGGTTATATTTCTCCTCATTTTGTCACCAACAAAGAAAATATGTCT GTAGATTTTGAACAAGCTGCAGTATTAGTGACAGATCATAAAATTAGTAATTTACAAGAA ATTCGTTCTCTTTTAGAAGAGGTAGTTAAAAATTCTACTCCTTTGCTTATTATTGCTGCT TCTTTTGAAAATGATGCTATAGGTGCTTTGGTTTTCAATAAAATTAGTGGAGTATTTAAT GTAGTAGCTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQKMIHKGFQFVNSGAKAVSIKEGIIKASREVVTRLLAKSKPIETQGDIENVATIS SGQKEIGHIIASAMEKVTKKGVISVDESKGFETELEVVQGLKYDKGYISPHFVTNKENMS VDFEQAAVLVTDHKISNLQEIRSLLEEVVKNSTPLLIIAASFENDAIGALVFNKISGVFN VVAT |
Subgroup ID | IX-IJ |
CpnDB ID | b31188 |
Genbank Accession ID | KY986918 |
Description | Candidatus Phytoplasma phoenicium (ChicBS) |
Strain Name | ChicBS |
16S Group/Subgroup | 16SrIX-J |
16S Genbank Accession ID | KY986922 |
Host Latin Name | Cichorium intybus |
Host Common Name | chicory |
Country of Origin | Saudi Arabia |
References | Perez-Lopez et al. Int J Syst Evol Microbiol 68(2):518-522, 2018. |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACCGTTTTAGCGCAAAAAATGATTCATAAAGGTTTTCAGTTTGTTAATTCTGGCGCT AAAGCTGTTTCTATTAAAGAAGGTATTACGAGAGCTTCTCAAGAAGTTGTATCAAAACTG TTATCTAAATCAAAACCTGTCGAAACACAAGGCGATATCGAAAACGTAGCAACTATTTCT TCCGGTCAGAAAGAAATAGGTCGTATTATAGCTTCGGCAATGGAAAAAGTTACTAAAAAA GGTGTTATTAGTGTAGACGAATCTAAAGGATTTGAAACTGAACTTGAAGTAGTACAAGGT TTGAAATATGATAAAGGTTATATTTCTCCTCATTTTGTCACCAACAAAGAAAATATGTCT GTAGAATTTGAACAAGCTTCAGTATTAGTTACAGATCATAAAATTAGTAATTTACAAGAA ATTCGTTCTATTTTAGAAGACGTAGTAAAAAATTCTACTCCTTTACTTATTATTGCTGCT TCTTTTGAAAATGACGCTATAGGTGCTTTAGTTTTTAATAAAATTAGCGGCGTGTTTAAT GTAGTAGCTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQKMIHKGFQFVNSGAKAVSIKEGITRASQEVVSKLLSKSKPVETQGDIENVATIS SGQKEIGRIIASAMEKVTKKGVISVDESKGFETELEVVQGLKYDKGYISPHFVTNKENMS VEFEQASVLVTDHKISNLQEIRSILEDVVKNSTPLLIIAASFENDAIGALVFNKISGVFN VVAT |
Subgroup ID | V-IC |
CpnDB ID | b27155 |
Genbank Accession ID | KJ939990 |
Description | Candidatus Phytoplasma sp. rubi Rubus stunt phytoplasma (RS) |
Strain Name | RS |
16S Group/Subgroup | 16SrV-C |
16S Genbank Accession ID | MH279544 |
Host Latin Name | Rubus sp. |
Host Common Name | blackberry |
Country of Origin | Germany |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAATTGTTTTAGCTCAAAGTATGATTCAAAAAGGTTTTAAATTTGTTAATTCTGGTGCT CAATCTGTTCTAGTTAAAAAAGGAATTCTTAAAGCTTCACAAAAAGTCATAGAACAAATT TTAGAAAAATCTAAACCAATTTCTACACAAGAAGAAATAGCTAATATCGCTATACTTTCT TCAGGTAGTAAAGAAATAGGAGAAATTATAGTTTCTGCAATAAATAAAGTTACTCAAAAA GGAATAATTAGCATAGGAGAATCTAAAGGTTTAGAAACTGAATTAGAAGTTGTTGAAGGA ATGCAATATGATAAAGGTTATTTATCAAGTATTTTCGTTAATAAATTGGCCAATATGTCA GTCGAATTCGAAAGAGCATTAATTTTGGTAACTGATCATAAAATTAATAACATTAATGAA ATTAATCATTTATTGGAAGAAGTTAAAGCAAAAACTCAATCTTTGTTAATTATAGCTAAT TCGTTTGATAACGATGTAATTAATATTTTGGCGCTAAATAAGTTTCATGGTATTTTAAAT ATTGCTGCTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | AIVLAQSMIQKGFKFVNSGAQSVLVKKGILKASQKVIEQILEKSKPISTQEEIANIAILS SGSKEIGEIIVSAINKVTQKGIISIGESKGLETELEVVEGMQYDKGYLSSIFVNKLANMS VEFERALILVTDHKINNINEINHLLEEVKAKTQSLLIIANSFDNDVINILALNKFHGILN IAAT |
Subgroup ID | VII-IA |
CpnDB ID | b27156 |
Genbank Accession ID | KJ939978 |
Description | Candidatus Phytoplasma fraxini Ash yellows phytoplasma (AshY) |
Strain Name | AshY |
16S Group/Subgroup | 16SrVII-A |
16S Genbank Accession ID | MH279540 |
Host Latin Name | Fraxinus sp. |
Host Common Name | ash |
Country of Origin | France |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAATTGTTTTAGCTCAAAGTATGATTCAGAAAGGTTTTAGTTTTGTAAATTCTGGTTTT AAATCTACTTTAATTAAAAAAGGTATTCTTCAAGCTTCTAATAAAGTAATAGAACATATT TTAAAAAAATCTAAGCCTGTTTCTACAAGAGAAGAAATAGCTAATATTGCAACAATTTCT TCAGGAAGTAAAAAAATAGGACAAATTATAGTTTCTGCTATGGATAAAGTTACTGAAAAA GGCGTTATAACTATAGGGGAATCTAAAGGATTAGAAACAGAATTAGAAGTTGTTAAAGGA ATGCAATATGATAAAGGTTATTTATCAAGTATTTTTGTTAATAATTTAGCTAATATGTCT GTTGAATTGGAACAAGCATTGATTTTAGTTACCGATCATAAAATTAATAATATTAACGAA ATCAGTGGTTTATTAGAAGCGGCCAAAGATAAATCAAATCCTTTATTCATCATCGCCAAT TCATTTGATAATGATGTAATTAATATTTTAGCATTAAATAAATTTCATGGAGTTTTAAAT GTCGCTGTTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | AIVLAQSMIQKGFSFVNSGFKSTLIKKGILQASNKVIEHILKKSKPVSTREEIANIATIS SGSKKIGQIIVSAMDKVTEKGVITIGESKGLETELEVVKGMQYDKGYLSSIFVNNLANMS VELEQALILVTDHKINNINEISGLLEAAKDKSNPLFIIANSFDNDVINILALNKFHGVLN VAVT |
Subgroup ID | X-IA |
CpnDB ID | b27159 |
Genbank Accession ID | KJ939977 |
Description | Candidatus Phytoplasma mali Apple proliferation phytoplasma (AP) |
Strain Name | AP |
16S Group/Subgroup | 16SrX-A |
16S Genbank Accession ID | MH279542 |
Host Latin Name | Malus domestica |
Host Common Name | apple |
Country of Origin | Germany |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCTACTATTTTAGCTCAAAAAATGATTCATAGAGGTTTTAAAGCAATAGATTTAGGGGCT AATCCTGTTTTAGTAAAAGAAGGAATAGAAAAAGCAACAAAAAAAGTTATATCAAAACTT TTAGAAAAATCAAAACCAGTAATAACACAAGAAGATATAGAAAATGTAGCTTCTATTTCA TCTGGAAGTAAAGAAATTGGAAAAATAATTGCTTTAGCAATGCAAAAAGTAACAAAAAAT GGTGTTATTAACGTTGATGAATCTAAAGGATTTGAAACCAAATTAGAAGTAGTTGAAGGT ATGCAATATGATAAAGGTTACGCTTCACCTTATTTTGTTAACAATAGGGAAACTATGTCA GTCGATTTAGAACAACCTTTAGTTTTAGTAACAGACCATAAAATAAACAATATTCAAGAA ATTTTACATTTATTAGAAGAAGTAGTAAAACAAGGTAAGTCATTATTAATAATTGCTGAT TCTGTTGAAAATGAAGTTACCAGTATTTTAGTTATCAACAAAATGAAAGGAACATTTAAT ATAGTTGTTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATILAQKMIHRGFKAIDLGANPVLVKEGIEKATKKVISKLLEKSKPVITQEDIENVASIS SGSKEIGKIIALAMQKVTKNGVINVDESKGFETKLEVVEGMQYDKGYASPYFVNNRETMS VDLEQPLVLVTDHKINNIQEILHLLEEVVKQGKSLLIIADSVENEVTSILVINKMKGTFN IVVT |
Subgroup ID | X-IC |
CpnDB ID | b27165 |
Genbank Accession ID | KJ940010 |
Description | Candidatus Phytoplasma pyri Peach yellow leaf roll phytoplasma (PYLR) |
Strain Name | PYLR |
16S Group/Subgroup | 16SrX-C |
16S Genbank Accession ID | MH279541 |
Host Latin Name | Prunus persica |
Host Common Name | peach |
Country of Origin | USA |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCTACTCTTTTAGCTCAAAAAATGATTCATCGTGGTTTCAAAGCAATAGATTTAGGTGCT AATCCTGTTTTAGTAAAAGAAGGAATAGAAAAAGCGACAAAACAAGTTATAGCAAAACTT TTAGAAAAATCAAAACCAGTAATAACACAAGAAGATATCGAAAATGTAGCTTCTATTTCT TCTGGAAGTAAAGAAATTGGAAAAATAATTGCTTTAGCAATGCAAAAAGTAACCAAAAAT GGTGTTATTAATGTTGACGAATCAAAAGGATTTGAAACTAAATTAGAAGTAGTTGAAGGT ATGCAATATGACAAAGGTTATGCTTCGCCTTATTTTGTTAATAATAGAGAAACTATGTCA GTTGAATTAGAACAACCTTTAGTTTTAGTAACAGATCATAAAATAAATAATATTCAAGAA ATTTTACATTTATTAGAAGAAGTAGTGAAACAAGGTAAGTCATTATTAATAATTGCTGAT TCTGTAGAAAATGAAGTTACTAGTATTTTAGTTATCAACAAAATGAAAGGGACATTTAAT ATAGTTGTTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATLLAQKMIHRGFKAIDLGANPVLVKEGIEKATKQVIAKLLEKSKPVITQEDIENVASIS SGSKEIGKIIALAMQKVTKNGVINVDESKGFETKLEVVEGMQYDKGYASPYFVNNRETMS VELEQPLVLVTDHKINNIQEILHLLEEVVKQGKSLLIIADSVENEVTSILVINKMKGTFN IVVT |
Subgroup ID | X-IF |
CpnDB ID | b27166 |
Genbank Accession ID | KJ940007 |
Description | Candidatus Phytoplasma prunorum European stone fruit yellows phytoplasma (ESFY) |
Strain Name | ESFY |
16S Group/Subgroup | 16SrX-F |
16S Genbank Accession ID | MH279543 |
Host Latin Name | Catharanthus roseus |
Host Common Name | periwinkle |
Country of Origin | Italy |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTCTTTTAGCTCAAAAAATGATTCATCGTGGTTTTAAAGCAATAGATTTAGGTGCT AATCCTGTTTTAGTAAAAGAAGGAATAGAAAAAGCAACAAAACAAGTTATAGCAAAACTT TTAGAAAAATCAAAACCAGTAATAACGCAAGAAGATATTGAAAATGTAGCTTCTATTTCA TCTGGAAGTAAAGAAATTGGAAAAATCATTGCTTTAGCAATGCAAAAAGTAACAAAAAAT GGTGTTATTAATGTTGATGAATCTAAAGGTTTTGAAACCAAATTAGAAGTAGTTGAAGGT ATGCAATATGATAAAGGTTACGCTTCACCTTATTTTGTTAATAACAGAGAAACTATGTCA GTTGAATTAGAACATCCTTTAATTTTAGTAACAGATCATAAAATAAATAATATTCAAGAA ATTTTACATTTATTAGAAGAAGTAGTTAAACAAGGTAAATCATTATTAATAATTGCTGAT TCTGTAGAAAATGAAGTTACAAGTATTTTAGTTATCAATAAAATGAAAGGAACATTTAAT ATAGTTGTTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATLLAQKMIHRGFKAIDLGANPVLVKEGIEKATKQVIAKLLEKSKPVITQEDIENVASIS SGSKEIGKIIALAMQKVTKNGVINVDESKGFETKLEVVEGMQYDKGYASPYFVNNRETMS VELEHPLILVTDHKINNIQEILHLLEEVVKQGKSLLIIADSVENEVTSILVINKMKGTFN IVVT |
Subgroup ID | XI-ID |
CpnDB ID | b31184 |
Genbank Accession ID | MH279493 |
Description | Candidatus Phytoplasma oryzae (SCWL) |
Strain Name | SCWL |
16S Group/Subgroup | 16SrXI-D |
16S Genbank Accession ID | KR020685 |
Host Latin Name | Saccharum officinarum |
Host Common Name | sugarcane |
Country of Origin | China |
References | Muirhead,K.S., et al. Journal, reference info. |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCTACTGTTCTAGCTCAAAATATGATTCATAAAGGTTTCAAATTTATTGATGCAGGAGCA AAATCTATCTCGGTTAAAGAAGGTATTTTAAAAGCAGCAAAAAGAGTATCTCAAGAATTA CTTAAAAAAACTAAATATGTAACAACTCAAGAGGATATTGAAAATGTTGCTTCTATTTCT GCAGGAAATAAAGAAATAGGTAAAATTATCGCTTCTGCAATGGAAAAAGTAACTAAAAAC GGTGTTATTAATGTTGATGAATCCAAAGGATTTGAAACAGAATTAGAAGTAGTTAAGGGA ATGCAATATGATAAGGGTTATGTTTCTCCTCATTTTGTAACAAATAAAGAAAATATGTCA GTAGAGTTAGAAAAAGCATTCGTACTAGTTACTGATCATAAAATAAGTAATATTCATGAA ATCAGACCTTTATTAGAAGAGATAGTTAAAAAGTCTACACCTATATTAATGATCGCTGAT TCATTTGAAAATGATGTTATAAGTACATTAATATTCAATAAAATTAGTGGAGTATTTAAC ATAGTAGCGACA |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQNMIHKGFKFIDAGAKSISVKEGILKAAKRVSQELLKKTKYVTTQEDIENVASIS AGNKEIGKIIASAMEKVTKNGVINVDESKGFETELEVVKGMQYDKGYVSPHFVTNKENMS VELEKAFVLVTDHKISNIHEIRPLLEEIVKKSTPILMIADSFENDVISTLIFNKISGVFN IVAT |
Subgroup ID | XII-I(B/C)B |
CpnDB ID | b26419 |
Genbank Accession ID | NC_021236 |
Description | Candidatus Phytoplasma australiense Strawberry lethal yellows phytoplasma (NZSb11) |
Strain Name | NZSb11 |
16S Group/Subgroup | 16SrXII-B/C |
16S Genbank Accession ID | NC_021236 |
Host Latin Name | Fragaria x ananassa |
Host Common Name | strawberry |
Country of Origin | New Zealand (Katikati, Bay of Plenty) |
References | Andersen MT et al. BMC Genomics, 2013;14(1):529. |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCCACTGTTTTGGCTCAAAGCATGATTCATCGTGGTTTTAAAGCGATTGATTCAGGAGCA AATCCGATGTTAGTGAAAGAAGGAATTCAAAAAGCAGCTCAAGTGGTTTCTGAAAAACTT TTAGAAAAATCCAAAAAAGTAGCGCTTCAAACCGATATCCAAAACATCGCATCAATTTCT TCTGGTAGTCAAGAAATTGGAAAAATAATCGCTCAAGCAATGGAAAAAGTAGGCAAAAAC GGCGTTATTAACGTTGATGAATCTAAAGGATTTGAAACAAATTTAGAAGTTGTTCAAGGT TTGCAATATGATAAAGGTTATGCCTCTCCTTATTTTGCTTCTGACAGAGAAAGCATGGCA GTAGAATTAAGTCAACCTTTAGTTTTAGTTACTGATCACAAAATTAGTACAATTCAAGAA ATTTTGGCTATTTTAGAAAACGTAGTTAAAGAATCCAAAGCTTTATTAATTATTGCAGAA TCAGTAGAAACTGAAGTTTTAGGGGTTTTGGTAGCTAATAAATTAAGAGGGACTTTTAAT GTAGTTGTTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFKAIDSGANPMLVKEGIQKAAQVVSEKLLEKSKKVALQTDIQNIASIS SGSQEIGKIIAQAMEKVGKNGVINVDESKGFETNLEVVQGLQYDKGYASPYFASDRESMA VELSQPLVLVTDHKISTIQEILAILENVVKESKALLIIAESVETEVLGVLVANKLRGTFN VVVT |
Subgroup ID | XII-IA |
CpnDB ID | b27168 |
Genbank Accession ID | KJ939979 |
Description | Candidatus Phytoplasma solani Bois noir phytoplasma (BN44948) |
Strain Name | BN44948 |
16S Group/Subgroup | 16SrXII-A |
16S Genbank Accession ID | MH279537 |
Host Latin Name | Catharanthus roseus |
Host Common Name | periwinkle |
Country of Origin | Germany |
References | Dumonceaux et al. PLoS ONE, 9(12), e116039, 2014 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACAGTATTAGCGCAAAGTATGATTCATCGTGGTTTTAAAGCGATTGACTCAGGAGCA AATCCGATGCTAGTTAAAGAAGGGATCGAACTTGCTGCTCAAACAGTTGCACAAAAACTT TTAGCCAAATCCAAAAAAGTAGAAGGTCAAGAAGATATTCAAAATGTAGCCGCTATTTCT GCCGGTAGTGGAGAAATTGGTAAAATTATTGCTCAAGCGATGGAAAAAGTGGGCAAAAAC GGCGTGATTAATGTCGATGAGTCCAAAAGTTTTGAAACCAATTTAGAAGTGGTACAAGGT TTGGAGTATGATAAAGGTTATGCTTCGCCTTATTTTGTCTCCGACAGAGAAAGTATGACA ATTGAATTAAATCAACCTTTAGTTTTAATAACTGATCATAAAATTAGCACGATCCAAGAA ATTTTACCTCTTTTAGAAGGAGTGGTCAAAGAATCAAAAACTTTATTGATCATCGCTGAA GCAGTTGAAAACGAAGTTTTGGGAGTCTTAGTTGCTAATAAATTGAGAGGAACTTTTAAT GTTGTAGTCACC |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFKAIDSGANPMLVKEGIELAAQTVAQKLLAKSKKVEGQEDIQNVAAIS AGSGEIGKIIAQAMEKVGKNGVINVDESKSFETNLEVVQGLEYDKGYASPYFVSDRESMT IELNQPLVLITDHKISTIQEILPLLEGVVKESKTLLIIAEAVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | XIII-(A/I)I |
CpnDB ID | b27178 |
Genbank Accession ID | KT444662 |
Description | Candidatus Phytoplasma sp. Mexican periwinkle virescence (MPV-S83) |
Strain Name | MPV-S83 |
16S Group/Subgroup | 16SrXIII-A/I |
16S Genbank Accession ID | KT444665 (A); KT444664 (I) |
Host Latin Name | Fragaria x ananassa |
Host Common Name | strawberry |
Country of Origin | Mexico (Michoacan) |
References | Perez-Lopez and Dumonceaux Int. J. Syst. Evol. Microbiol., 66(11), 4406-4415, doi:10.1099/ijsem.0.001365, 2016 |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCAACTGTTTTAGCTCAAAGTATGATTCATCGTGGTTTTAAAGCAATTGATAGAGGGGCT AATCCTATTTTCGTTAAAGAAGGGATCGAATTAGCGTCTCAAGTGGTTTCTCAAAAGCTA TTGGCTAAAACTAAAAAAGTAGCAGCTCAAGAGGATATCCAAAATGTAGCAGCTATTTCT TCAGGAAGTCAAGAAATTGGTAAAATTATTGCTCAAGCTATGAAAAAAGTTGGTAAAAAT GGTGTTATTAATGTTGATGAATCAAAAGGATTTGAAACCGAGTTAGAAGTAGTTCAAGGT TTACAATATGATAAAGGATATGCTTCTCCGTATTTTGCTTCAGATAGAGAATCTATGGCG GTTGAATTAAACCAACCATTAGTTTTAGTGACCGATCATAAAATTAGTACCATTCAAGAA ATTTTGCCTATTTTAGAAGGTGTTGTTAAAGAATCTAAATCTTTATTAATTGTAGCTGAA TCAGTTGAAAATGAAGTTTTAGGGGTTTTGGTTGCTAATAAATTAAGGGGTACTTTTAAT GTAGTTGTTACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATVLAQSMIHRGFKAIDRGANPIFVKEGIELASQVVSQKLLAKTKKVAAQEDIQNVAAIS SGSQEIGKIIAQAMKKVGKNGVINVDESKGFETELEVVQGLQYDKGYASPYFASDRESMA VELNQPLVLVTDHKISTIQEILPILEGVVKESKSLLIVAESVENEVLGVLVANKLRGTFN VVVT |
Subgroup ID | XIV-IA |
CpnDB ID | b27180 |
Genbank Accession ID | KF383984 |
Description | Candidatus Phytoplasma cynodontis Bermuda white leaf phytoplasma (AL85/11) |
Strain Name | AL85/11 |
16S Group/Subgroup | 16SrXIV-A |
16S Genbank Accession ID | KF383980 |
Host Latin Name | Cynodon dactylon |
Host Common Name | Berumuda grass |
Country of Origin | Albania |
References | Mitrovic et al. Plant Dis 99, 1578_1583, 2015 |
Virtual Gel | |
Nucledotide UT Length | 555 bp |
Nucledotide UT Sequence | GCTACTGTATTAGCTCAAAATATAATTCATAAAGGATTTAAATTTATTGATGCAGGTGCT AAATCAACTTCAGTTAAAGAAGGTATTTTAAAAGCAGCAAAAAGAGTATCTCAAGAATTA CTTAAAAAATCTAAATCTGTAACAACTCAAGAAGATATAGAAAATGTAGCTTCCATTTCA TCTGGTAGCAAAGAAATAGGTAAAATTATCGCTTCTGCAATAGAAAAAGTAACAAAAAAC GGAATTATTAATGTTGATGAATCAAAAGGATTTGAAACTGAATTGGAAGTAGTTCAAGGA ATGCAATACGAAAAAGGTTATGTATCACCTCATTTTGTAACTAACAAAGAAAATATGTCA GTAGAATTAGAAAAAGCTTATATTTTAGTAACAGATCATAAAATCAATAACATAAACGAA ATAAGAAATTTATTAGAAGATATATTCAAAAAAACTGCAACACCTTTATTAATTATTGCT GAATCTTTCGAAAATGACGTGATTAGTACTTTAATATTAAACAAAATTAGTGGTATTTTA AATGTAGTAGCAACA |
Peptide UT Length | 185 aa |
Peptide UT Sequence | ATVLAQNIIHKGFKFIDAGAKSTSVKEGILKAAKRVSQELLKKSKSVTTQEDIENVASIS SGSKEIGKIIASAIEKVTKNGIINVDESKGFETELEVVQGMQYEKGYVSPHFVTNKENMS VELEKAYILVTDHKINNINEIRNLLEDIFKKTATPLLIIAESFENDVISTLILNKISGIL NVVAT |
Subgroup ID | XIV-IC |
CpnDB ID | b27183 |
Genbank Accession ID | KF383985 |
Description | Candidatus Phytoplasma cynodontis Bermuda white leaf phytoplasma (RS59/11) |
Strain Name | RS59/11 |
16S Group/Subgroup | 16SrXIV-C |
16S Genbank Accession ID | KF383981 |
Host Latin Name | Cynodon dactylon |
Host Common Name | Berumuda grass |
Country of Origin | Serbia |
References | Mitrovic et al. Plant Dis 99, 1578_1583, 2015 |
Virtual Gel | |
Nucledotide UT Length | 555 bp |
Nucledotide UT Sequence | GCTACTGTATTAGCTCAAAATATCATTCATAAAGGGTTCAAATTTATTGATGCAGGTGCT AAATCAACTTCAGTTAAAGAAGGTATTTTAAAAGCAGCAAAAAGAGTATCTCAAGAATTA CTTAAAAAATCTAAATCTGTAACAACTCAAGAGGATATAGAAAATGTAGCTTCTATTTCA TCTGGTAGCGAAGAAATAGGTAAAATTATCGCTTCTGCAATGGAAAAAGTAACAAAAAAC GGAATCATTAATGTTGATGAATCAAAAGGTTTTGAAACTGAATTGGAAGTAGTTCAGGGA ATGCAATATGAAAAAGGTTACGTATCACCTCATTTTGTAACTAACAAAGAAAATATGTCA GTAGAATTAGAAAAAGCTTATATTTTAGTAACAGATCATAAAATAAATAATATAAATGAA ATAAGAAATCTATTAGAAGATATATTCAAAAAAACTGCAACACCTTTATTAATTATTGCT GAATCTTTCGAAAATGACGTAATTAGTACTTTAATATTAAACAAAATTAGTGGTATTTTA AATGTAGTAGCAACA |
Peptide UT Length | 185 aa |
Peptide UT Sequence | ATVLAQNIIHKGFKFIDAGAKSTSVKEGILKAAKRVSQELLKKSKSVTTQEDIENVASIS SGSEEIGKIIASAMEKVTKNGIINVDESKGFETELEVVQGMQYEKGYVSPHFVTNKENMS VELEKAYILVTDHKINNINEIRNLLEDIFKKTATPLLIIAESFENDVISTLILNKISGIL NVVAT |
Subgroup ID | XV-IB |
CpnDB ID | b31186 |
Genbank Accession ID | MH279494 |
Description | Candidatus Phytoplasma brasiliense (PeruPBT) |
Strain Name | PeruPBT |
16S Group/Subgroup | 16SrXV-B |
16S Genbank Accession ID | KX810334 |
Host Latin Name | Carica papaya |
Host Common Name | papaya |
Country of Origin | Peru |
References | Muirhead,K.S., et al. Journal, reference info and Wei, W. et al. Crop Protection, 92, 99-106, doi:http://dx.doi.org/10.1016/j.cropro.2016.10.024, 2017 |
Virtual Gel | |
Nucledotide UT Length | 555 bp |
Nucledotide UT Sequence | GCTGTTTTATTAGGACAAAGTATGATTCGTAAGGGTTTTGAAGCTCTTGATACAGGCGGA TTTAAAGGAGTTCTTTTAAAAAAAGGTATTTTAGAGGCGGCTTCTGTTGTAGCTAAACAA CTTTTAATGAAATCTCGTTCTGTTAATACTCAAGAAGAAATTGAAAATGTAGCGACTATT TCATCTGGTAGCGCAGAAACTGGAAAAATTGTAGCTGCTGCTATTGAAAAAGTTGGCAAA ACTGGGGTTGTTAATGTTGATGAATCCAAGAGCTTTGAAACTGTTTTGGATGTTGTTGAA GGTATGCAATTTGAGAAAGGTTATGTTTCTCCTTATTTTGTTGTGAATAAGAAAGATTCT CTAATAGAATTAGAACAAGCTTCTATTTTTATTACCGATCATAAAATTAATAGTATATTC GAAATTAATCGTATTTTAGAATATTCATTAAGTAATAGGGTTCCTTTATTAATTATTGCA GAATCTTTTGATAATGAAATGGTTAGTATTTTAGTGGCAAATAAAAAAGGTAATTATTTA AATGCAGTAGCAGTT |
Peptide UT Length | 185 aa |
Peptide UT Sequence | AVLLGQSMIRKGFEALDTGGFKGVLLKKGILEAASVVAKQLLMKSRSVNTQEEIENVATI SSGSAETGKIVAAAIEKVGKTGVVNVDESKSFETVLDVVEGMQFEKGYVSPYFVVNKKDS LIELEQASIFITDHKINSIFEINRILEYSLSNRVPLLIIAESFDNEMVSILVANKKGNYL NAVAV |
Subgroup ID | XXI-IB |
CpnDB ID | b35242 |
Genbank Accession ID | VIAE01000001.1 |
Description | Candidatus Phytoplasma pini strain (MDPP) |
Strain Name | MDPP |
16S Group/Subgroup | 16SrXXI-B |
16S Genbank Accession ID | KU242428 |
Host Latin Name | Pinus pungens |
Host Common Name | Mountain Pine Tree |
Country of Origin | USA: Maryland |
References | Costanzo, S., Rascoe, J., Zhao, Y., Davis, R.E., Nakhla, M.K. First report of a new 'Candidatus Phytoplasma pini'-related strain associated with witches'-broom of Pinus spp. in Maryland (2016) Plant Disease, 100, p. 1776. |
Virtual Gel | |
Nucledotide UT Length | 552 bp |
Nucledotide UT Sequence | GCTACTATTTTAGCTCAAAATATGATTCAAAAAGGTTTTAAATTTATCAATTCAGGTTAT AAAGCAGTTTCAATTAAAGAGGGTATTTTAAAAGCCTCTAAAGAAGTGGCTAAAAGACTT TTGGAAAAATCTAAACCAATAGAAACACAAGAAGATATTGAAAATGTCGCTTCTATCTCA TCAGGCCAAAAAGAAATAGGCAAAATTATAGCTGATGCTATAGAAAAAGTAACAAAAAAA GGCGTTATTAGTGTTGATAAATCGCAAGGTTTTAAAACTGAATTAGAAGTAATTCAAGGT ATGCAATATGATAAAGGCTATTTATCTCCTTATTTTGTTACTAATAAAGAAAATATGTCA GTAGAATTAGAACAAGCATCTATTTTAGTTACTGATCATAAAATTAGCAATATTCAAGAA ATTAGGCCTTTATTAGAAGATATAGTAAAAAATTCAACACCTTTATTAATTATTGCTGAT TCATTGGAAAATGATGTTGTTAGTACTTTAATTTTTAATAAAATGAGTGGTATTTTTAAT ATTGTAGCAACT |
Peptide UT Length | 184 aa |
Peptide UT Sequence | ATILAQNMIQKGFKFINSGYKAVSIKEGILKASKEVAKRLLEKSKPIETQEDIENVASIS SGQKEIGKIIADAIEKVTKKGVISVDKSQGFKTELEVIQGMQYDKGYLSPYFVTNKENMS VELEQASILVTDHKISNIQEIRPLLEDIVKNSTPLLIIADSLENDVVSTLIFNKMSGIFN IVAT |
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